Scaffold JGI24713J26584

Basic Information
Taxon OID	3300002166 Open in IMG/M
Scaffold ID	JGI24713J26584_10013916 Open in IMG/M
Source Dataset Name	Biogas fermentation microbial communities from Germany - Plant 4 DNA1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002166 Open in IMG/M

Scaffold ID

JGI24713J26584_10013916 Open in IMG/M

Source Dataset Name

Biogas fermentation microbial communities from Germany - Plant 4 DNA1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3247
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3247

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Ecosystem

Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location Name	Bielefeld, North Rhine-Westphalia, Germany
Coordinates	Lat. (^o)	52.0385	Long. (^o)	8.4956	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

Bielefeld, North Rhine-Westphalia, Germany

Coordinates

Lat. (^o)

52.0385

Long. (^o)

8.4956

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F014634	Metagenome / Metatranscriptome	261	Y
F020859	Metagenome / Metatranscriptome	221	Y
F048731	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24713J26584_100139161	F048731	N/A	KKMVRTMEKALRYALTISEDPIQIKKNVEEYLAAAGFDRRYKFKWRALSGNAKYTSSGIFEFAGQRYYFSKMSGELELERI*
JGI24713J26584_100139163	F014634	AGGAGG	MKEKIEEIFDLERIREYAETNIDLTEWIEEEYGETRKILLIATLVEGAYGAYIPGMVLELFGRAEGYDLEDPYNYEKNETIHDALISLEIEVNECLNELMPAKGTYYMSYHEADGSYCLFYEEVEQV*
JGI24713J26584_100139164	F014003	AGGAGG	MQTVFNKAKVKSWIKKAYKNSLFGYGHGYITDGYAMLVDEPHMRPTILEVFGTLTPECKHSAEQFKRLMRLPNKPIKAIDSKLEFILKPKHRLRILYDPKTGKELAVKSMYFDLLNNPEACTFHTNELMSMLWIVYDNETVGVIAPYRLEDQLSHVKFKAEEEREQV*
JGI24713J26584_100139166	F020859	AGGAGG	MKKIIAREVNPAYVDFSXYFYDDSLKSVSGENCAVYIVPGDXERYGGFNMEEYKEXEEKAKAIIXGFRDVSAKWPYGYATYKEVMEDNAIPYTSHTCHLLKKWAEYANPYDTGDIAEFLTITTGEKWEVKAFTGYSQGDYCEVVYCVNHYTPERINEIGELWLGCGTEFCIEGYYGYFVPESIRWREGETLRKYLADSYGCEPEELEIYLYEGEHIVTDY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24713J26584_10013916

Overview

Ecosystem & Geography

Associated Families

Sequences