Scaffold JGI24713J26584_10006163

Overview

Basic Information

• Taxon OID: 3300002166
• Scaffold ID: JGI24713J26584_10006163
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 4 DNA1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6630
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F057301	Metagenome / Metatranscriptome	136	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24713J26584_100061637	F014003	AGGAGG	MKVVFNKAKVKSWIKKAHKHHSFGYGHGYITDGYVMLVDEPHMRPTILEVCGTLTPECKYTAEQFEKMAELPYPAIEVIDSRLEFVLEPKRRLRIFYDPKTGEKLTVNSAYFDLLDNPEEHRFYANTLKSTLWIVHNDKTVGVVAPFNLQEQLSHISFKTEGVR*
JGI24713J26584_100061638	F057301	AGGAGG	MRDSIPGIPTPFGTPKDNDDEFSVNLSEAPTGGGYLIPDGDYPAVLVDLRKGFSKSGNPQWIWTFAIMSGEHAGKEFPLFTAIIPSALWKVAETVEALGLGKGGTVSKFTKSEALSRRCIISIRKDTYNGQERSSIVKVLPHPDGPGPVTGFNPRKASDNPVPF*