NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24707J26582_10058139

Scaffold JGI24707J26582_10058139


Overview

Basic Information
Taxon OID3300002163 Open in IMG/M
Scaffold IDJGI24707J26582_10058139 Open in IMG/M
Source Dataset NameBiogas fermentation microbial communities from Germany - Plant 1 DNA1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1366
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location
Location NameBielefeld, North Rhine-Westphalia, Germany
CoordinatesLat. (o)52.0385Long. (o)8.4956Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F101423Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
JGI24707J26582_100581393F101423N/AMNKPYLDIKIFRGYKEITRIVTPDTGMRQFSVEGIGTFVVPTGDYLLRQYFNKHCIYLNYNLQNSNPGEPVEAEKWTQYEYPPLSPEEFQVLLEAQTVADLLSETEKDTKWIWYLLIGGIVLVGLIMLMGGA*

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