Scaffold JGI24707J26582_10041114

Overview

Basic Information

• Taxon OID: 3300002163
• Scaffold ID: JGI24707J26582_10041114
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 1 DNA1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1818
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ct6GI21 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014003	Metagenome / Metatranscriptome	266	Y
F045597	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24707J26582_100411142	F045597	AGGAGG	MRFDVHITNPPMLISDSAGHGSRRTYAAVARVSQGREFLDFVAVYCHGYYDQHGEVEILDRLLGLLVVSVPVKTFQRLVLAQFPEELPAGWEDAWDAIEAAVLALPE*
JGI24707J26582_100411143	F014003	AGGAGG	MKAMFNKAKVKSWIKKAYKHHSFGYGHGYITDGYVMLVDEPHMRPTILEVCGTLTPECKYTAEQFEKMAKLPNTAIEVIDSRLEFVLEPKRRLRIFYDPKTGEKLTVDSAYFDLLDNPEEHRFYANALKSTMWIVHNNETVGVVAPFRLQEQLSHISFKTEEGTVEHLDN*