Scaffold JGI24707J26582_10012897

Overview

Basic Information

• Taxon OID: 3300002163
• Scaffold ID: JGI24707J26582_10012897
• Source Dataset Name: Biogas fermentation microbial communities from Germany - Plant 1 DNA1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4554
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (9.09%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Biotransformation → Mixed Alcohol Bioreactor → Unclassified → Unclassified → Biogas Fermentantion → Biogas Fermentation Microbial Communities From Biogas Plants In Germany

Source Dataset Sampling Location

• Location Name: Bielefeld, North Rhine-Westphalia, Germany
• Coordinates
  • Lat. (^o): 52.0385
  • Long. (^o): 8.4956
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F064525	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24707J26582_1001289710	F064525	N/A	MKEKIENIIKEVGINEVEAILNQIKSKDNVKENIKKDFIELLSGCTISFLGDDIEYRKDGILLFYYQKNYNIFRVKYDIWSNFEIKYSLNNQELEDLLAGIVEDVLNYKGVTPRSDSFC*
JGI24707J26582_1001289711	F064525	N/A	MKNKIENLIKEVGVNEVEAILNQLKSKSKANVKENLKKDFIELLSGCIISFDCDDIDYKKDGILLFYYRKNNNSFRLKYDIWSNFESKYNLNSHELRNLLMGVVE
JGI24707J26582_100128978	F064525	N/A	MKNKIENLIKEAGINEVESILNKLKSKVNVKENLKKDFIELLSGCTISFDCDDIEYQKDGKLLFYYQKNENIFRLKYVIWSNFESKYNLNNQELEDLVVSIVEDVLNYKGVTPLGFA*