Scaffold JGI24766J26685_10025082

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10025082
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1463
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F012862	Metagenome / Metatranscriptome	276	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100250821	F012862	N/A	YIDAQARVKPKSLHHVYEWKRTGNINSRLFKLNKVSQDGLSFRLDYELLPSKSLVPTSKGKHRHVFINKASVMEAGMPVVIAPRASERLVFETNGMTVFMPKGASVTVKRPGGAGARNQFGLAYSIFFSGQLVNNSIKRSGFQKIFNSGMTKALKLPPNIKTVQYKFSANSIKLQADASLAAAFGGAL*
JGI24766J26685_100250822	F000258	GGAGG	MTIKYKQDAMLEIRKYLWDQLKYYGMFLETDYYSDNVGIEIVPIIPVQQAAELNQFLSGKTHIVYDKIGMSFEEMWAISCEQVLFTIYSTDVSEINSLRNFMIDLFRRMDESAADVNKWTGLSNKFKFHSIFIADISPTSPSEELQGFFSADVILEIKYSRMADVNGRII*