Scaffold JGI24766J26685_10021679

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10021679
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1606
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014089	Metagenome / Metatranscriptome	266	Y
F025683	Metagenome / Metatranscriptome	200	Y
F033645	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100216791	F014089	GGA	MSDYVEIIYPQSMTAKLMHNGEVIAEYKVAQCDGCALVVKIDAFGYKIGQGGEKLAWLCGGCR*
JGI24766J26685_100216792	F033645	AGGGGG	MAGFLDNYEDVAARIKRLWETHPSARVQNNIIEFNAEKGFILVQTEIFKEYEDEKPSAVDYAFGNVATYNVQMKKFFVEDTVTSSIGRCIGLLLGTDKRPTRQDMEKVETISTTVAKSTADDYDPWSKKFGDVPSFKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVAEAPQCSHGHMIWKQAHEGAPKNWGGYFCTERTKATQCTPRWYVFASDGKWKPQV*
JGI24766J26685_100216793	F025683	GGAG	MVLDLLDPQMLGRLSLVVILMVISAAAGYAKGFKEGKREGMARRKSMIRHAVNKGVN*