Scaffold JGI24766J26685_10013367

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10013367
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2158
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032194	Metagenome / Metatranscriptome	180	N
F060717	Metagenome / Metatranscriptome	132	N
F073146	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100133672	F060717	AGG	VRLADEQPDNVCFECGKAWGTHPLKSSENHRSWIDLCDVCLKLTAVVDVSEYGYMKENWDGEKVV*
JGI24766J26685_100133676	F032194	GAGG	MRNKHCMEAFYRTLKETDIPSGQSIICEHFFASGWDAAIDALSLAYQRQFENDGVDTQLIRRDPQEPPNR*
JGI24766J26685_100133677	F073146	GAG	MSEPVSEAVMTITEVEPFHFSIEIEGSDLSLEVSXIMVKFLNXCLQEIHADKKIH*