Scaffold JGI24766J26685_10010226

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10010226
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2517
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000957	Metagenome / Metatranscriptome	821	Y
F003714	Metagenome / Metatranscriptome	472	Y
F014261	Metagenome	264	Y
F105031	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100102264	F000957	N/A	MSAFKHLDGMVALLSEIYEINERVMCGDLCSAKTAIASTKMKKLLNYYHEALHEDGASKVSLQAYVAAGGWVGITYSYEVDGFEVAGSQVPRRV*
JGI24766J26685_100102265	F105031	N/A	MTIIRPNAKPALWWLFPWSYARTLHTAANALRALTDRQDKALEMQAHIIVDQSEEIANLRRRVEDLNEIIHGYRPGL*
JGI24766J26685_100102266	F003714	N/A	MPNANHPYTDHLTFAGRPIPLKRPMAVYAAVRLQAILPQIAALNAAGKTQADAAAALGTTVCSLRKWIEITGTTWTNLKVRGPYKTRHA*
JGI24766J26685_100102267	F014261	N/A	MKSLIALSFILIFGWLAVVTFCGPELARAINGPEPVKAKVVRSRR*