Scaffold JGI24766J26685_10009711

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10009711
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2597
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000852	Metagenome / Metatranscriptome	860	Y
F000868	Metagenome / Metatranscriptome	853	Y
F019324	Metagenome / Metatranscriptome	230	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100097112	F000868	AGGCGG	MLREVGEYPVLPNTSFLENENQMIIDAEYSAIGEQLVEDWVNSNLNEGQLYADYCFAQMCESNYLKGRFNQFYDLKPEDQYYIEWDEEA*
JGI24766J26685_100097113	F019324	GAGG	MLGYVLEDLDNMIDAVAAAITTVNSDDDPWLHGSLSKTQEFLQGLWAEGYFD*
JGI24766J26685_100097115	F000263	AGGAG	MMNAEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELEKAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGASNDN*
JGI24766J26685_100097118	F000852	AGGA	MTTKREYLKQQGITVGARGRFSGAAKVAIDEAVKKGVTFTPEAVAKKAK*