NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold JGI24766J26685_10008832

Scaffold JGI24766J26685_10008832


Overview

Basic Information
Taxon OID3300002161 Open in IMG/M
Scaffold IDJGI24766J26685_10008832 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2738
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001460Metagenome / Metatranscriptome690Y
F002387Metagenome / Metatranscriptome565Y
F009685Metagenome / Metatranscriptome314Y
F033433Metagenome / Metatranscriptome177Y
F063705Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
JGI24766J26685_100088322F002387AGGCGGMASFLEDVNQMVIDAVITDIGAQLFDEWMNANLDEGQYYADKRFAEMSGDEFIMNEFNKFYELTEEDEDYQC*
JGI24766J26685_100088323F001460GAGGMLGYDEEDLNRMINAIHDAKLFYLRTPSDLMDKEPLVKDLQDAVSFLQGLWAEGYFD*
JGI24766J26685_100088324F063705GGAGGLTKSSHFLEYIRLHKISLEQDWEAAKNNEPLNEDEYDPSDDYFEGAITATEHLLSVATDIMNSPNERYE*
JGI24766J26685_100088326F033433GGAGMYNKPSLEILEVNYSVSPGGVDEFEVYSLDERDSFDPPIFSTTSLHEAVQYCYDLGKDFIVRTFAEWEARELA*
JGI24766J26685_100088328F009685GAGGMKMSDQYIDDVLNRAQQLLWGGSETENIEAHNLIAKLIKDRMKHSQPGAELPGYDHN*
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