Scaffold JGI24766J26685_10006655

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10006655
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3226
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001460	Metagenome / Metatranscriptome	690	Y
F023344	Metagenome / Metatranscriptome	210	Y
F047059	Metagenome / Metatranscriptome	150	Y
F050377	Metagenome / Metatranscriptome	145	Y
F085700	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100066551	F085700	AGGCGG	MAKANEFKAAEKLTDYLNNAXFSPAVMANVLTTEHTLYTQDXLMELVRYIIQYNSLRLKSEWDKGYTSEGLLLADALNDMLEAKYGAVDRNLTIDSLKETRVRDSKYVMDLDSF*
JGI24766J26685_1000665510	F023344	AGGCGG	MEAFTDTVGEHLLGAIQVDIEQALFEDWNNANLDEGEAYAEYRFMQFAPDNLKQSYNEYYGYIEGDEYCL*
JGI24766J26685_100066552	F050377	AGGA	MSTPTTTREYLKTQGIAVGKRGRFSAAALGVISKAVQDGVVFSDKKNAK*
JGI24766J26685_100066557	F047059	GGAGG	LTKSTHFMEYMKIHKISLEQDLEDAKNNVPIPEDEYFESDAYYQGAIDTMEHILSVASDIMIDNERVY*
JGI24766J26685_100066558	F001460	AGG	MLGYTKDDLDTMINSVHDAKLFYLRSPSDLMDKTELRTNLEMTVSFLQGLWAEGYFD*