Scaffold JGI24766J26685_10002180

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10002180
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5814
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028149	Metagenome / Metatranscriptome	192	N
F090287	Metagenome / Metatranscriptome	108	Y
F097235	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100021802	F090287	AGGAGG	MPALTPQELATLGGCFDCMEPGLQQTMIITLLQQIQAASPGAPLTTTSTGGLRTATATSAVNPARKKFTLQNQKNEELFVKFGTGATTTDYHIALPAHNTGNKHSDPLMLDGYIGAXSVAAXAGSPSYTFAEFV*
JGI24766J26685_100021803	F097235	AGGA	MYGKMMRKRKMDAMNRMGAEVETVEFMPPEGMKLEGESGSAMVDWRMTPNGTIEIVAFDGVTLGEKGSVDMAEDAAENEMDDMEEEA*
JGI24766J26685_100021804	F028149	AGGAG	MATGNVISCKQFASFLVSQEPVYDKEVLKDIRPFDGLIGYYNTGSFDAYSGTTHTFDRFNSVFPNVTGVWENPTGASCVGQPCDPSENKIGWGFTRSTYSLEKQAWGSDILCFDQIMTKTKAKEHFRQIIDDVLRPATNWITTYYLQRKAMELSGYSPTGISGGAFACKAGLPAISFSWVGAGYTTLRVLDSASAPVTAASLGLLTPDILRSRVTRQYFLGAIQAGKEGYDSLQLHTDKETFRYLAKSNSQLTDAWRFGEFAPAAKEFYKFGFMGFVGDFMVKVLQFPLRFNATSTGGNYTLVLPYKNVAASEGLRSEFNGDYDKAQYQISYINNPRALRVLPFRPEAVNPNMPFMVRDYGGRWKFATNDLGADCSGRPIDNSRGNKGKFIADFQLAVKPEHPEWLEAIFHKVNGACPVIISGCAEDPGDPAQNYNSANGVCNPTLQFTAVANDAGNFVIGTTGILCDGNIVTNAGISEASVAALVVALQAVWDAEFGATSGTWSVVSGNVIQLASSAFPTATEVVPCTNVTLEFAI*