Scaffold JGI24766J26685_10001250

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10001250
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7493
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (84.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013279	Metagenome / Metatranscriptome	272	Y
F016642	Metagenome	245	N
F017972	Metagenome	237	Y
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F055450	Metagenome / Metatranscriptome	138	Y
F068766	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_100012501	F016642	N/A	YGSVDRPNYAEGKKNGYLEHELLANVRANVSEWAVASLTDTAWNVPWYPNELHPRRAKLPDVGVNFEVRTVRTRDSIPFWSKDSGKIIVGTKILDEDYYSQVEVYGWCNPEEYATMQYRDEAIGGWRVPVTELKEF*
JGI24766J26685_1000125012	F023834	GGAGG	MSEPTVDYWRAKAELCRDLALIQIEDEDTEKEAGMNLMRMTYALSMVDTFNEGGQDEQA*
JGI24766J26685_1000125014	F026864	AGGAG	MSEQDKMAQFVFTVVIVPDNKRYEVELWDFAGEEPALIAAGEGSNWRTALGEALSKIELPTDKVEKTINDVIKEGVEDEGV*
JGI24766J26685_1000125018	F020863	GGAGG	MQTTIEEVRSLVQALEKLVEPLFEGEVLEDAPYESMKRPHIVLQEGSKTYGRAWRIHFTGGSKYGSGHWEPRGFSDYLGGSKAEAAQSLRKLIAGIHTGLLIAEKKEGKA*
JGI24766J26685_100012505	F013279	AGGA	MQYDYRCTECNAELTIERSIHEQPREPSCFECHIPMIRKWDSPSITFKGKGFYSTDK*
JGI24766J26685_100012506	F017972	AGGAG	VRTRHLSLVTQRHSVTTTTKSNVSSPFGPVSPGSTTLLAQETLRANQEARLLELLNSLENVVDNLNFKSFTAYDTLVIATEGVRVALSNIATEEAGTDTL*
JGI24766J26685_100012507	F055450	GGAGG	METENKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKKTDEQEGKTWLDLDGNTVPVVGVRVRTADGRGAPVLKEDIHKGTNEGNNRGEA*
JGI24766J26685_100012509	F068766	AGGAGG	MTDNVVGFHPKNKLVNFYEIATAEGNAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ*