Scaffold JGI24766J26685_10000745

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10000745
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9452
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002722	Metagenome	534	Y
F016149	Metagenome / Metatranscriptome	249	Y
F032583	Metagenome	179	Y
F051715	Metagenome / Metatranscriptome	143	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000074510	F016149	GGA	MGRFVAPDKGVKETVIGGKTYNPDRGGIYNVESKRHADAMKREGFFEASLNPYSQGDRQRGFTCVQCGFDGWFRKCGRCGHENESKTPTDGE*
JGI24766J26685_100007453	F051715	AGG	LLEGNHRLDGYDYPDDEWVYYQMAERFGWTPDQVDDLPAYLSDWLLAIAGTIEQVKADGMRAE*
JGI24766J26685_100007454	F032583	GGAGG	MSKEIKLPSGATAKLKDPASLRVKDRKRVMTTADEAKGGDLAKALALGXALLAMLVEEWSFELPXPAVQLESLDELEMKDYDYLVEQTKEAQKVLFPTLADTPENETDPKAITANSKG*
JGI24766J26685_100007457	F002722	AGGA	MAGRTGVRSTLASFLSAPAITGLNQVFTSFPKRINYQVNSQPGQLTRSAVVIFIVREDENRLAIGGATNGWKRVDYTVILQVFCHSLQRNSEDVMTDFDTLIDNIKTRLRSNXNFGDSTGNLVWQGAEPAIRARYGEPATSNEGATEIFAEIEFDVTQMIQA*