Scaffold JGI24766J26685_10000172

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10000172
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16804
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (76.47%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002489	Metagenome / Metatranscriptome	554	Y
F021111	Metagenome / Metatranscriptome	220	Y
F021757	Metagenome	217	Y
F044483	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000017214	F021111	GGA	MENSKDRLNHIETDGGTIKETDAMGREKFWEDLGRPND*
JGI24766J26685_1000017215	F002489	AGGA	MTENNEQPQNLEDNLPMVNYIMLHRIYDLLTLIANKLVGPEDVSKMVEYHNQGYLLGPAPSFTPGYEDNDGSK*
JGI24766J26685_1000017217	F044483	AGGAG	VKKIYADQIAYKMNRAEKNVYEDVSKATEALKWMVEKIESYLNKCLNVEDGQCNLSWKHDECKMLMDILYDLTENVKYKESVWRFDPKQEHLWD*
JGI24766J26685_1000017229	F021757	N/A	MMTRKDYVKTADILSSYKDLIGDEFTYHDLVDDFASMFAEDNSQFNADKFLEACNK*