Scaffold JGI24766J26685_10000144

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10000144
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17831
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (4.35%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047677	Metagenome / Metatranscriptome	149	N
F077297	Metagenome / Metatranscriptome	117	Y
F082692	Metagenome / Metatranscriptome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000014417	F082692	N/A	MTNPEQDILISMTLLRAGAQGKTKTFQHAVGSHHARLKVWQIRAINYTILIGLVGLITLTIYSIV*
JGI24766J26685_100001443	F077297	N/A	MTKDQIKAAVVIVVTITICATMQIMYIALKDSKKAIEGYERRADRATHVIDSLEATNVQRMLEIEQLNVQLERNKERYEANISAIDSLDRNGLRRAMHNLLSSLTEERYAGQSND*
JGI24766J26685_100001444	F047677	AGAAG	MNWLKSIFSNDKDASSKRVASILALVVCINLSYIGTFTEYKTPEYMFDGLLILAGGGLGLTVIESIFTKKKSNDEGSN*