Scaffold JGI24766J26685_10000024

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10000024
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33521
• Total Scaffold Genes: 50
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 44 (88.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002689	Metagenome / Metatranscriptome	536	Y
F018705	Metagenome / Metatranscriptome	233	Y
F019800	Metagenome / Metatranscriptome	227	Y
F032265	Metagenome	180	Y
F040085	Metagenome	162	Y
F046898	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000002410	F019800	GGA	MSWEEIEAIGQATDIREVEQKREDLAKLTLRVFGSEDGQKLLHWLRDMYVNVPIAVPGTDPSHAYFAEGQRTVVRDIEVRINTARKL*
JGI24766J26685_1000002416	F032265	GAGG	MATLPQFKQRQIARRSTSDIDRLAKQYKANIDALTGEYQTAFTGYQAGVAEKMKPFEAQMATYKESLLPTYEAQKAAYQQKLEDYNKLLADIEANPVTEEIGVREYKVPRWGLFGLAGYETKREQFTYYAPKEIPKFTETAPALPEAPTAPTIEEFDSSQFGAKKAEAESVFKREVGERRAAKIGAVSRKVTRPLLSGEQG*
JGI24766J26685_1000002433	F018705	N/A	LGGLCNICEIYTWGMDTPTPKLKPFLMRLHPHTRQLLDKAAADQHRSVSSIIDQCVRDQLQPRYGELQPRLQRFLSGVKQ*
JGI24766J26685_1000002438	F046898	AGGAG	MLAPNLAAGRDMRERQLDIFEQRDHQFLERCRALAVLICKQQGQVSINDIRVIIDVPPGVHPSVLGAVFRTKQFVRVGYTEAAHPQAHARVVRVYSLATNKE*
JGI24766J26685_1000002440	F040085	AGGAG	MNLPDKPAIRHAYEQAVVALLNATNATEEEAEVFVDAMADLIFTTMQTYLSEKESNAVDHH*
JGI24766J26685_1000002447	F002689	GAGG	MATVDATDARLSTHEEVCALRYEQINARLKRIETILMKTVGVMLVSMAGTIFAAIWITK*