Scaffold JGI24766J26685_10000008

Overview

Basic Information

• Taxon OID: 3300002161
• Scaffold ID: JGI24766J26685_10000008
• Source Dataset Name: Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 46845
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 47 (83.93%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Sandusky Bay, Ohio, USA
• Coordinates
  • Lat. (^o): 41.474889
  • Long. (^o): -82.854137

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000258	Metagenome / Metatranscriptome	1443	Y
F001229	Metagenome / Metatranscriptome	741	Y
F001464	Metagenome / Metatranscriptome	689	Y
F001900	Metagenome / Metatranscriptome	620	Y
F004006	Metagenome / Metatranscriptome	457	Y
F005053	Metagenome / Metatranscriptome	413	Y
F005054	Metagenome / Metatranscriptome	413	Y
F005479	Metagenome / Metatranscriptome	399	Y
F025747	Metagenome / Metatranscriptome	200	Y
F033808	Metagenome / Metatranscriptome	176	Y
F071173	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000000820	F033808	AGG	MEIFLLGMMIGFAVGYPMGLFVDKLDKKEKAKNGGR*
JGI24766J26685_1000000824	F025747	AGGAG	VPNLNEFFHKEEIKAVELERLGGKKPCNKCDKDAEEYFWDATTLTMSWTCPDGHDNSYRIK*
JGI24766J26685_1000000827	F004006	AGGAG	VTENVEGPIQSVSINQILVAILEEHGKITVPTLKFLDAAQTDKELVIDYDETVPSFTFSLRDKIEQQ*
JGI24766J26685_1000000834	F001464	N/A	MARENRQRLRKKFVYFFLNGKVHKVLKLSRAKDEVIAWCYPDKKRLMYSYSQVDKGMERAYSVVEASKILGRHRVTIEEYILQGKIKQPQKVYPISNPDSTWSKYMLSESDILDIHQFIIDAGHIRDLPSRSELQAILKHNLILYTKTEDGKFVPVWKAE*
JGI24766J26685_1000000843	F071173	GGAG	MITKFGKRFLTSYLAGSESFLNKELAFGIGSTAPNLKGNDTRLEFEFYRIPVELSSFNILQSGVDIDGDPVFNYFVTYKSTIPQDISGVISEIGLYPGGRQSFNNFDSKFITSFTNEFNWFDGSVNPTSQANTQDSNGAYTFLSKVSDSMIRVDVASGQTKEYINTLISDDISGYSINDTISIAYKKADNNVSKIRVKFYSSDLAYYYVDFTPQSGTGDKIQTLSLSNLFSNYTASPNLPDPSSIIKIGVATTATGGATTVYFDAIRINDEDTFDPGYGLISRSILSTPLIKKPGRPVDIEYKLQLDF*
JGI24766J26685_1000000846	F005053	AGAAGG	MSMYLPRGSVLNVEAKDLLATPQGAVKVWNKITEHNRSDISISIERIERSVRTSNGTLRKNHIADKRRFSMSWTMLPSYRNLTVDGGWGAEDLRSFYLSDDGKKEFNIRINLAKSGTDTSSSGALYTPTMANTSSELYTVVFGGCNFSVVKRGLQPHWNVSIELEEV*
JGI24766J26685_1000000848	F005479	AGAAG	MPELINTLQALKKKDHEDKKFFASLKGVEIGEYEDDKKGGPSFEDIQLRAAGIGATSNDVVSLQGNFAAQAGFGIGAGLGYSRE*
JGI24766J26685_1000000851	F000258	GGAGG	VTANYKLDAMLELRKYLWKELYTRNIFDEDDYWSDNLNENIIPIIPVQQAAEMNQFLSGKKHMVYDKIGMSYEDNWLICCEQVMFTVYSTSVADINEIRNYMTDEFRRMDESARDINKWVDLSDKFKFHTLWVADISPTAPSEELQGFFSSEIILEIKYSRITDSQGRFL*
JGI24766J26685_1000000852	F001900	GGAG	LDNSGLLVQASSGLERMMYANQNGPLKDSTVSQISAFVYYEAAVISKLTTNAQFKAAFTKIMFDQIESDFGNYIDALARSKPKSLHHVYEWKKAGNKSARLFKLNKVSEDGLSFKINYTLLPSKSLVPSNNSKRRHVFANKAAVMEEGKPLVIRPKNSERLVFEYEGETVFMPKGKSVTVKRPGGSGSTNQFNLAHSRFFSGRLVNESIKKSGFQRIFNSSMTKALRVPSDIKTVKYSFSANTIRSQADAALAASFGGVM*
JGI24766J26685_1000000853	F001229	GAG	MNSIVDSVLSMNLDVYRQYEIQDPDTGAIVREWNYYKTIPCHAKGVISNSATTRSSDKQIFSNKYLNDQIIQVRTAEKLTAREKVTNIRDVEGNTIWNEINYPNETPTVFEVMGTTPITDPFGRVIAYNSSMKRSENQQIGQ*
JGI24766J26685_1000000854	F005054	N/A	MAEILINSQSPITHNVFWNGDIVEPSSLPVVKLFDVTTDPAISPAINPTQILAVLNSIADENNPGSYIVYIPYSYTSRNRTLRLQWEYQVNGTNVARADEVFVVTPYVDFNHVQDLGFSTDSSDPNYKSYKELIKAEKYARKQIEQHTGQKFYLYDDVAVAYGHGSDILPLSSKIYQIHELYAQDILLLDNINEINNWNYPVEISESGYGIKINRAGLLDNTVYTANGMVPPSINDSSGVFQSGVTYKIQGRFGWEKVPDNVELAAIELMKDYFSKDTMWRNKYVKTISTFDWDFEYTGDAYTGTGNAYADSLLADYVLTTKVEII*