Scaffold JGI24766J26685

Basic Information
Taxon OID	3300002161 Open in IMG/M
Scaffold ID	JGI24766J26685_10000006 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002161 Open in IMG/M

Scaffold ID

JGI24766J26685_10000006 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53631
Total Scaffold Genes	62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (14.52%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

53631

Total Scaffold Genes

62 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (14.52%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

0 (0.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Sandusky Bay, Ohio, USA
Coordinates	Lat. (^o)	41.474889	Long. (^o)	-82.854137	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Sandusky Bay, Ohio, USA

Coordinates

Lat. (^o)

41.474889

Long. (^o)

-82.854137

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002407	Metagenome / Metatranscriptome	562	Y
F004370	Metagenome / Metatranscriptome	441	Y
F004479	Metagenome / Metatranscriptome	436	Y
F034539	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24766J26685_1000000625	F004479	N/A	MHNSKLLVGNSGDKVYLHENYVIKEAGVYPEKFKQQMEWLQNCNHPNFIKIEPIGSHSYKMKKYPTWFDKITEQTTTQSIDQLNNLISIVNGFDGYGKDVDTRSYLDKLEMRTGYKYEGNLNAASQWGFVHGDLTISNILYDKDFIFIDPRGTEEQDYYDFGKLMQSFVMKYEAHIYNNWNDKYIKFCTEAEKIMYEWYDPYLLKFYLAVHLLGAVPFFELNERYELAGSFLKKGHELFDELEIKYEK*
JGI24766J26685_1000000631	F002407	N/A	METTIKKINGYELSSFVKKLLPIDKFIFMKIGKEGTVSSVYFPERDAVKLVNTPTKDIFDADINSPLKVSFYNGNKVIDALSHFNGDVRGRIRYTEYDGELMASDFILENEDLQISLACTDPSLSFMEMSKEETDRAFGTDESLFQFDLLTTHVDKMKSLFNLDKDEDIFTLYINEKGIGIKGTSYDATLCHSYDSSSEVGTKVVIYKKYVNLLDKENYRVIVCDNKVVFRSLDTNTHLTVAVAITDED*
JGI24766J26685_1000000636	F034539	N/A	MLKKTINTSRLKVKYVLGNHSSIPEYPDAEDIIFELIRDYCGKVAKDIKFTNVSLQKKYELTEDKTSAIIERLVADGILTEINSNSAYKTYEVIVNPYE*
JGI24766J26685_1000000651	F004370	N/A	MYKVRKINFGWYKRRHGILLENLPPLKQRLLLENHFMKWLDSDPQTFEIVFKIEDMHEHEKNPNKILWNPFRETFTTIKEVEADSNLVDWTCAICPSEIKTRMDSKKVENFVCKKCSEAHNSRNKRVDQRIIDSSIRFTKHCKSLLKGEQREFLTHIRRSSKG*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24766J26685_10000006

Overview

Ecosystem & Geography

Associated Families

Sequences