Scaffold JGI24033J26618_1040827

Overview

Basic Information

• Taxon OID: 3300002155
• Scaffold ID: JGI24033J26618_1040827
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 647
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015747	Metagenome	252	Y
F061606	Metagenome	131	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24033J26618_10408271	F015747	N/A	MDNNSQVTGLRALVANVMLERARELSDLQACEVWRLIQLIDTGASPKSVRPATLQLAMDFKRFPHARRVIEEK
JGI24033J26618_10408272	F061606	N/A	MDQYPPVNESGLVTRENSLEKVLALSISQAHEIWHAMQLIAANGSLEGLPRPVVQIAMELXYFLNAWKVVAEKAVLHERLIGKPRRRGFWV*