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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002153 Open in IMG/M |
| Scaffold ID | JGI24540J26637_10000048 Open in IMG/M |
| Source Dataset Name | Marine eukaryotic phytoplankton communities from the Norwegian Sea - 20m ARK-7M Metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 38245 |
| Total Scaffold Genes | 55 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (10.91%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Norwegian Sea, Atlantic Ocean | |||||||
| Coordinates | Lat. (o) | 73.0188 | Long. (o) | 9.8566 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002033 | Metagenome / Metatranscriptome | 601 | Y |
| F004631 | Metagenome / Metatranscriptome | 430 | Y |
| F048336 | Metagenome / Metatranscriptome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24540J26637_1000004813 | F002033 | N/A | MSKFNTFLADHGTKVIIALLVLTYFKSCSIDSDVDKIKKDQRSLVAEVDSLQSQLNRTIITEDLMIKLIKEVPAWKTLRIEEISDKERISINALEEKED* |
| JGI24540J26637_1000004834 | F004631 | N/A | MKHVKNYKDYLTEAKNFRTGKPYHGSKILVFDLDDTLVISAAKIKVCNKKTGECYSLTPEEFNTYEKGEHEELNFDEFKSLEIMKAGKLIEYYLKIFKEAYKSKIAVGIVTARDDRKMIHRWLREHVGYRIDYELIFAVNDPVHKYKGNISDRKKEAFKELIEMGYNDLQFYDDDDANLRLVKSLEKEYDGIAISTIKAIK* |
| JGI24540J26637_1000004846 | F048336 | N/A | MKKVQLFEQYISGSINESVSFDKKGIKAKLEDKVRIAKIAVEKWGGSYEKVLAKSEAAAKSGKLPNYKEHISVQGDDRQEQYDIFVGRNADKLAEKVAKIIRKYKKYEVEQSSTGAAAGWSGTARSTVGGAIEGRANFNPGGNRSFLIAVTCGSGIDSKIKDKMFQELYELFFVLDQYNSSDGGVDFDYSTGTNYDTIGLTNSSYQFGNAPSLRDIMNK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |