Scaffold M2t2BS2_11217905

Overview

Basic Information

• Taxon OID: 3300002144
• Scaffold ID: M2t2BS2_11217905
• Source Dataset Name: Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17240
• Total Scaffold Genes: 25
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (24.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Phycisphaerae → unclassified Phycisphaerae → Phycisphaerae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 57.305
  • Long. (^o): 20.0745

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001283	Metagenome / Metatranscriptome	731	N
F007912	Metagenome / Metatranscriptome	342	Y
F053138	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
M2t2BS2_112179052	F007912	N/A	MFGYGYQYSAMVSGGGNPAAAIFAAYKSRVETDGGVVENNACTTTFLNTIL*
M2t2BS2_1121790523	F053138	N/A	MIGLFEVSATKAGKTISCTMFGNIAEKEQLFGELMNQHKIDQSERYLWKLSNITTKYNSFDNDAF*
M2t2BS2_1121790524	F001283	N/A	MTDQEAKETLNKPIICKEAERSIREMKIRLSKYTGDKTEQTKHLNNLDNLLNLAHKQAIDLDTYEDLLATYLFKIGEQQAKIRELVEMHAISEHIHEVGIDEVVKDFKSKIQLR*