NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t2BS2_11093511

Scaffold M2t2BS2_11093511


Overview

Basic Information
Taxon OID3300002144 Open in IMG/M
Scaffold IDM2t2BS2_11093511 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5296
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (5.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019836Metagenome / Metatranscriptome227Y
F045764Metagenome / Metatranscriptome152N
F072257Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
M2t2BS2_110935112F019836N/AMQKAELELPVKQFHRLYDLLGDLIDYEAEINVFNMENNDIDFLEDIRHELFNQIPEEKTYTDYAITGRSSNRSIQAGKLYKIVEKTSKYGFKLEVEDGEVIYCLSKNCAFLNGRDWTIINVEN*
M2t2BS2_110935113F045764N/AMLDMKLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSHDYEIWDEDIIKVRKELRKYI*
M2t2BS2_110935115F072257N/AMIQELDKVVHQWCDDNDRWMYIEYDRDGMVMGLNFMQGDEYECFKKDWCVSDKGLTAFYKQMLYTFTYEQESVPEHCFINSCMWAYHSAISCESEYAEPCRRNTHRNR*
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