Scaffold M2t2BS2

Basic Information
Taxon OID	3300002144 Open in IMG/M
Scaffold ID	M2t2BS2_10019642 Open in IMG/M
Source Dataset Name	Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002144 Open in IMG/M

Scaffold ID

M2t2BS2_10019642 Open in IMG/M

Source Dataset Name

Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS2 (113f)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	6860
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (44.44%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

6860

Total Scaffold Genes

9 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (44.44%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Ecosystem

Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Baltic Sea

Coordinates

Lat. (^o)

57.305

Long. (^o)

20.0745

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010604	Metagenome / Metatranscriptome	301	N
F054676	Metagenome / Metatranscriptome	139	N
F081060	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
M2t2BS2_100196422	F054676	AGGCGG	MAITIQDQPTTTYIRPAFAPIEYLVSSDNTAQSGFKIVCKVYLNPLAANTLISTQQISARPSSTQAILSIQDIVKSFVPISYSVPEGDTVGLITDTLNDFKVTFQEYYDSALQGSVVASNVISAYSSSPKYIQFASNEWQDYQLSTSAIEKNLLSNFSNTIPVINAFSSSNNWLKVKTDQKTQIQWAQSGATANFKVWLKTLNASFAQISLSQLDLGTTSKGYFALDIGRQEASAHAWDTPIVWTAAKYYAVAIYDESTTELVSNAYLYELDECDTNYTPYELHWLNRWGGFDSFVFDGKSNQTTDINKTFAKYSVDRISGTSLNYSTYAQRTRAFNTATSESYSLNSRLLQDFEVSGLEDLVTSPEVYWNSEAGFVSVNVSGNTYQHAKSENGLVYSLALDMTIENSDERQW*
M2t2BS2_100196423	F081060	N/A	MQNKLHANLDKYWQTVVDDLVQSLKDVGRYASGNTAQAIGDGNAQPVVVTASGFKITIVMPNYYEFLDEGVSGAKNNTNISRFKYTNKMPPIKAIRRFMLNRGINAPRTSNTQSGKRQDAEKIRNGIAFAIARSIFNNGTKRTDFYTNVINDKKLLAFEQMLLTQYSDYVLEIIRAD*
M2t2BS2_100196424	F010604	N/A	MEHTRLSKMTVGQYQLLNEIDGELPVMEQNIYAVAAIKDITYEEASKVKLKDFAVMIAELGEFNIKQLEKLKINSRIILNGSVYHLEHKPEKLTSGQLLDIINIRSKYQGEGVKVMDLLLAAISKPEGKNYGDDNLSLNERAALIRGMELDKVWNIFVFFWNLWNDYLNNTEDSLSKWMRETLAMSREILDNDGDSSA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold M2t2BS2_10019642

Overview

Ecosystem & Geography

Associated Families

Sequences