NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M3t6FKB2_10131045

Scaffold M3t6FKB2_10131045


Overview

Basic Information
Taxon OID3300002143 Open in IMG/M
Scaffold IDM3t6FKB2_10131045 Open in IMG/M
Source Dataset NameM3t6FKB2 (118f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1358
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name
CoordinatesLat. (o)65.3915Long. (o)23.49916667Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019477Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
M3t6FKB2_101310453F019477AGGAGMGSWEFESFRIGRLFHFNGNDYVKQSTRTARMLSNGRVFYFGKTEIIYPIAY*

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