Scaffold M3t6BS1_1384052

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold M3t6BS1_1384052

Scaffold M3t6BS1_1384052

Overview

Basic Information
Taxon OID	3300002141 Open in IMG/M
Scaffold ID	M3t6BS1_1384052 Open in IMG/M
Source Dataset Name	M3t6BS1 (103f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	40004
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (65.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	65.3915	Long. (^o)	23.49916667	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F082135	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
M3t6BS1_13840528	F082135	GAG	MRCPTSLRKTLHPMNLRSTLCTCAILVPAAAAALLTSGASAAVFQYSLSFANGFLVEGEFSTKASAPASFIEKNPTLTGETTGSWDYTTLTPAPYATSFLDSQTMRVLQSGALMSEASNVVDGMCLDKFLYLNFNHVGGPAIAALDFSTVYEGATSYYFVSNGSDPSGATVAFGSTGYNLFLFDVATSQGVYIATATSLTVQAVPAPGALALLAAAGASFGVGGGRRRRG*

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.