Scaffold M2t2FKB2_1212825

Overview

Basic Information

• Taxon OID: 3300002140
• Scaffold ID: M2t2FKB2_1212825
• Source Dataset Name: Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2FKB2 (112f)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2949
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 57.305
  • Long. (^o): 20.0745
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007525	Metagenome / Metatranscriptome	349	Y
F030094	Metagenome / Metatranscriptome	186	Y
F070119	Metagenome	123	N
F071246	Metagenome	122	N
F072347	Metagenome	121	Y
F082675	Metagenome / Metatranscriptome	113	N
F093864	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
M2t2FKB2_121282510	F072347	AGGA	MDNRTKAEILVQFTQDNFNDEVYEDFFDYNDLGIPLSIAVMQEMVILTDKGEELLQETWKELCEVFGADPNGEYENIDDVTGV*
M2t2FKB2_12128252	F093864	GGAG	MYNYNVEFVLEAMVIITHVSFDEPDLSDEFIIEEARQNLLTNYKIDPETLYLQDVIVHEV
M2t2FKB2_12128253	F030094	AGGA	MKLRGIFEGTFESVWSMEVPQAEWDYYLEINSDFDENDRDDIQEMWEHFKSIGCYDECDDTADTSVVMTGIETYNVEVEVN*
M2t2FKB2_12128254	F082675	GAGG	MSKQYHWVVVYDEDWKCFMVDAEGEILDRDKMLYNKESGKWEYLEEDTEQEAEYYRLEEILAYQLTRLDLSEKV*
M2t2FKB2_12128255	F007525	AGTAGG	MKTLEGVTVTYKEVIPTSKQMAEFYVWQEGAESYATITYLDRTVEVERNGEMYLSIPDVSKNGLSEHYQNIVRYSDDLEAEGIKDDIQLTQFIKTISNSGYQVYHMNPWWETLPHNDHDMGDVYDTFYEAVEGGIEYIMEESNWED*
M2t2FKB2_12128257	F070119	GGAGG	MNLNSYKAFDFVIPNCLEPGDVIEWGEEIYTVKKFDLLSDGFIIYAVDEMEEDVELLIPDNIVLSLMEEQ*
M2t2FKB2_12128259	F071246	GGA	MGKSSNEKVADKIVALLADGRISQADWRLWIPRRITDHNKMIIANAKNFADGINEVIENEQIGISKELLFDYQTGKQNGQ*