NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold M2t6BS1_1327045

Scaffold M2t6BS1_1327045


Overview

Basic Information
Taxon OID3300002137 Open in IMG/M
Scaffold IDM2t6BS1_1327045 Open in IMG/M
Source Dataset NameMarine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t6BS1 (107f)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing Center
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5590
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location NameBaltic Sea
CoordinatesLat. (o)57.305Long. (o)20.0745Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009788Metagenome / Metatranscriptome313Y
F037121Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
M2t6BS1_13270452F009788GGTGGMDIITKDTTNYIYTNISNEVEYSYYTMTIEAAEYTVNVTLAAPEGVNDRYVAFELIEGSQDLANATIALPNNGDYPYKITNATTLGGTTGIEIHRGILRLKQPQEVVYSYTNEETTIIYE
M2t6BS1_13270458F037121N/AMIITLKHYGDTYSIETKGDDLDATDVLKNFTSLMLCAGWAQVSIDNAILALNEEIDL*

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