Scaffold M2t6FKB1_1552885

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold M2t6FKB1_1552885

Scaffold M2t6FKB1_1552885

Overview

Basic Information
Taxon OID	3300002136 Open in IMG/M
Scaffold ID	M2t6FKB1_1552885 Open in IMG/M
Source Dataset Name	M2t6FKB1 (104f)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1483
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	57.305	Long. (^o)	20.0745	Alt. (m)		Depth (m)	1
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F055525	Metagenome / Metatranscriptome	138	Y
F060819	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
M2t6FKB1_15528851	F060819	N/A	ETTTVSGVYYLRLPNEDLNLNTAGTELAPNGVEGEGKYFAPWKTGQWMIYPGKIWHRPGILQSNENRYIVAADMEF*
M2t6FKB1_15528854	F055525	GGAG	MATSEEKQELLEDIKRPVRHYRIMLWGYGGENSYIRLTKEQ

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.