Scaffold M2t2BS1_1141208

Overview

Basic Information

• Taxon OID: 3300002131
• Scaffold ID: M2t2BS1_1141208
• Source Dataset Name: Marine microbial communities from the Baltic Sea, analyzing arctic terrigenous carbon compounds - M2t2BS1 (111f)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 53515
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 70 (69.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Unclassified → Unclassified → Unclassified → Marine → Marine Microbial Communities From The Baltic Sea, Analyzing Arctic Terrigenous Carbon Compounds

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 57.305
  • Long. (^o): 20.0745
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001443	Metagenome / Metatranscriptome	693	Y
F011754	Metagenome / Metatranscriptome	287	Y
F014503	Metagenome / Metatranscriptome	262	Y
F058680	Metagenome	134	Y
F065391	Metagenome / Metatranscriptome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
M2t2BS1_1141208101	F014503	N/A	MAMKTLVHHWRFNDGVTPINPGNPYGETVLPRSWSCWVYPEDDHDFEIWMARHCPTADYTHRFNSGDPMWTVAIMDHKEATLFTLKYGN*
M2t2BS1_114120863	F001443	AGGA	MPMYEATVRTPNGEEKKRVYADTPQEAKRLLEQLHGGPRAVPYIPHIVAS*
M2t2BS1_114120867	F058680	AGG	MTSDEKTASNIALEEFLAKGGVIQQIAKNVSGRIEGSTYSSWSKKKPSTSPLANPPEEEE
M2t2BS1_114120894	F065391	GAG	MQSCNRQHTFNTMPKQAGLIASGWSAINCVSLSYDRTPEITGVQEGWDG*
M2t2BS1_114120898	F011754	AGGA	MKIGFSFGRCVRDIVNGTVNIDDVAFIIAATSVHDKAQLENVIAMYMYRDDYLEGLDELACQQIAEELWDTNKILQPRREGIHRHKQPANSVWVDMFPTELSTNEPVKKAWDAYRFMLHMVENVDTEALETFK*