Scaffold JGI20165J26630_10025714

Overview

Basic Information

• Taxon OID: 3300002125
• Scaffold ID: JGI20165J26630_10025714
• Source Dataset Name: Cubitermes ugandensis P4 segment gut microbial communities from Kakamega Forest, Kenya - Cu122 P4
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1944
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Laurasiatheria → Chiroptera → Microchiroptera → Rhinolophidae → Rhinolophinae → Rhinolophus → Rhinolophus ferrumequinum (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location

• Location Name: Kakamega Forest, Kenya
• Coordinates
  • Lat. (^o): 0.2917
  • Long. (^o): 34.856

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001046	Metagenome	793	Y
F001563	Metagenome	670	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI20165J26630_100257143	F001046	GGA	MTMSYDYLHMRADNKVRELIAVKVLHTSLLNTTVVAFKLLPLGSYAVMPAPSPPFKTILELVLWNGLQSCCHITPDVISVIKIPSFHYFLYL*
JGI20165J26630_100257145	F001563	N/A	MMTYQRFTAAMLLIYGSLFLSGIYYCLGVFWCAAARMSELELEQ*