Scaffold C687J26616_10000308

Overview

Basic Information

• Taxon OID: 3300002120
• Scaffold ID: C687J26616_10000308
• Source Dataset Name: Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18896
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (75.68%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Unclassified → Soil → Soil Microbial Communities From Rifle, Colorado, Usa

Source Dataset Sampling Location

• Location Name: Rifle, Colorado, United States
• Coordinates
  • Lat. (^o): 39.53
  • Long. (^o): -107.78

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004935	Metagenome / Metatranscriptome	418	Y
F028324	Metagenome	192	Y

Sequences

Protein ID	Family	RBS	Sequence
C687J26616_1000030822	F004935	GAGG	MAXPLQVQIVEKARALIADEQHWCRGLLAQDASGASVLATSASAVKRCGLGAVVAAAYQLTHDFDAANELAHNALRPRYGVATLVQVNDMRGHAAVLALFDEVIAAGGS*
C687J26616_100003086	F028324	GGAGG	MTHSNLTVEVQGTHILVVLRGTCFRAKYRKQDAPWLATEEYGPDDPGAMISLSEFRNLAWAAANDTARQLGWIKGCNELHDAAKAAVPRHGPNARSDPFTTR*