Scaffold JGI24809J26612_1001660

Overview

Basic Information

• Taxon OID: 3300002100
• Scaffold ID: JGI24809J26612_1001660
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 500um MDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7635
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (69.23%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006445	Metagenome / Metatranscriptome	373	Y
F068110	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24809J26612_100166010	F068110	GGGGG	MHTSDKNSVLERRAEMMARLLQIHDDAAGEGTDEGAMIVTFEGYISGIPEFFTNDCHEAFRFKNREQAESFVAEFAGALLNPQVLDHP*
JGI24809J26612_10016606	F006445	N/A	MTDDLLDQVSRIYERARVEALTLLRSHEPAEHSVMPPREWMSATQLAEYWQLYNENDEPTTAGILKWAKRPADKFPLPHAYMGDLLRFNRDEVDQWARQEAERRREQAEKRKLKIA*