Scaffold JGI24808J26613_1014153

Overview

Basic Information

• Taxon OID: 3300002099
• Scaffold ID: JGI24808J26613_1014153
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1416
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci → Deinococcales → Deinococcaceae → Deinococcus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F105489	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24808J26613_10141532	F105489	N/A	MAVVKTNFDRRGKVGNAKAKDNVRYIQHRPDKDNERVMRPLFSSDGPMTRHEAYQFIDDAPKGTKFFTIIISPDPEKEDTHKDLDMRALTISTMQTIEEIITAQGITTPVVWVAAVHDDHTDKNHVHALAAIQGRLDKPDVQRLIADTTHACLEQRRELDRTRERQARSREKGAWELEPTLTEDTWER*