Scaffold JGI24219J26650_1001042

Overview

Basic Information

• Taxon OID: 3300002098
• Scaffold ID: JGI24219J26650_1001042
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B7 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8961
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24219J26650_10010421	F048735	N/A	MEYNGFSLQPPQDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMGIKMDQCGLLNPAQHMINCFQLIYGNDVLLHSQGIPNNYAIDIIDLFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQSKYGKDVSIGNLVEYRRMIVFESIDTRDSERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPMEWDAVNRYTHKWKTRTGVALHLSGEDSPNFKVPDAEIPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQGCDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNETGRRVGFYLGTREYSSSVGDVFEESIAMQLVKDCVEYGIHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTDRKISNLDKRTAKEAYDRRVTESWFQVHTAMSTQSLVGIDVEKHSAIVSELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFTFEEEQESLDILEIRDWEEKLVYSKNGVGNEAEEQDDWGYGGSSVDPDGF*
JGI24219J26650_10010422	F030662	AGGAGG	MKLKNPNDAIPGGLWYQYSDDKGNTYRVNGMDLTFGKQFIQKVKSDMTNKNVAIPENLDYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPACQKRREALNKAIG*
JGI24219J26650_10010427	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWTYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLAPNYTPQYTPDCYVCSDVITEPI*