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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300002092 Open in IMG/M |
| Scaffold ID | JGI24218J26658_1008220 Open in IMG/M |
| Source Dataset Name | Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1874 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Brandenburg, Germany | |||||||
| Coordinates | Lat. (o) | 53.152741 | Long. (o) | 13.022518 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000934 | Metagenome / Metatranscriptome | 828 | Y |
| F017785 | Metagenome | 238 | Y |
| F086266 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| JGI24218J26658_10082201 | F000934 | AGTAG | MPNLTTILSISESVMINDQRFVGQIISRNKRISTSEVMTVVPFQFTFKPMNYLLYSKNRDLLANLRYYDRSLTQYLNFGSTGWVNYISYQGDMTPSQIPSCQWQTSSTGTNLVLGNLPSISSTAYIVKAGDFCQMDSYCYIATQNVLRGSGSTVTIPVHRTILTALVSPQNAVIGQYGTTIAMGGNTYTGCTFPVILQAYPTYTLIPMTNDSFIQWSNGFQAIEAVT* |
| JGI24218J26658_10082202 | F017785 | GAGG | MTTAITPIQNTNNIRYADFIRIVTPSATYRFSTAPVKITVSAVDSQPFDALGALVGVGKVQRDIKSTANQTSVTLVGIDTALLGAVLNADVKGSQITMWKGFFDTSNQLITTGGSGGLYQYFYGFISSFSIGEQWMEEARMYVGTITVSASNIQMILQNRIAGRFTNDPSWQYFTPGDTSMNRVATIATLSYPFGKQ* |
| JGI24218J26658_10082203 | F086266 | GGA | MIRFANKFDFPVMYDLLEHFCKLHRFEILKDEAKWSKDYVFKQLSMVLAGVGFILIAEDGSGFLVAMKAPCFFIEGAYSLHEIIWHSKNDKTSLKLFKRFIEIGNEMKKSGEIKEAHFSCFTDSDFTRYGATKLQNTWKI* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |