Scaffold JGI24218J26658_1003430

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1003430
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3681
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000934	Metagenome / Metatranscriptome	828	Y
F017785	Metagenome	238	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_10034302	F000934	AGTAG	MANLTTVLSFAESVTINDQRFVGQVVSRNQRIATSEIITVVPFQFDFKPNNYLLYSKNRDLLANLRYYDKSLIQYLNFGSTGWENYINYMGDMTGSQIAACQWQTSSAAKILVLGSLPSISSSAVIVKAGDFCQVGLYTYIATQDVLRGSGTTVNIPVHRALINGPLGSAVNAVIGQYGTTVSMGGNTYTGVTFQVILQQYPTYSLVPMTNDSFISWTGXFKAFEAVL*
JGI24218J26658_10034303	F017785	AGGCGG	VNVITPXQNTNNIRYADFVQVVTPSATYQFATTPTALTIPAVSSTPFDGLGALVSIGDIQRDIKSTANQTTITLVGIDTSLLGWVLSQQVKGAQITMWKGFFDTDGNLITGGGSGGLYQYFYGYINTFSIGEQWMEEARMYVGTITVSASNIQIILQNRVGGRFTNDASWQFYNSGDTSMSRVGFVSTIYYPXGKQV*