Scaffold JGI24218J26658_1001067

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1001067
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9545
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (80.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001937	Metagenome / Metatranscriptome	614	Y
F020485	Metagenome	223	Y
F035995	Metagenome	171	Y
F057071	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_100106712	F057071	GGA	VKIREHLKFHIFDAKQLTIAMTGAFSTWAATGFQHDMPHLGYILVGFITGGLVSHNSQANPNVSPESHIATPYAANIDDGGNTAPLPVDGYKGEGVDVKKVIKINSGLVK*
JGI24218J26658_100106717	F001937	AGG	VFSNVNAATIIYSYFFIIIALMAGINIIAKHTIKKHTEELKDELTKINYALYNNGKTGLINKVEELLENQQQIKIDVEVMKAKYEKE*
JGI24218J26658_10010673	F035995	AGG	MSVVTPLQVEARLKDLSKLIDDAHDDLVNAEAEYHILKANYEIAMAEKRIELSRASSPTGKNYTIGERDDLALLANREAHQRIGAAEAVVKANRANVARLRVQVDIARSIGTSVRTGMDT
JGI24218J26658_10010674	F020485	AGG	MKIFCKAKQHWEINNGKLILGAESDEFLATQLAKMTARLEAEIRLEIYDQICSLDLVKDRKRLVKMGIENVALLVQDACAQIAIGETK*