Scaffold JGI24218J26658_1000246

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1000246
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33909
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (74.07%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014955	Metagenome	258	Y
F035159	Metagenome	172	Y
F086796	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_100024621	F014955	GGA	MEIDKIIVAATGIGYVVVGITQYFKGSLSNALIWVSYGTAQIGLWMNLK*
JGI24218J26658_100024624	F086796	N/A	MSDYSENYLKIQQLLKKYHNATLKWDYEKATKIAHELADETIRLEIASVRALKNQWIKQ*
JGI24218J26658_100024640	F035159	GGA	MFQTAFQANAFQNNAFQINITPVAPTKQGGDDASWTREELKRYKAIQKKLRLAEEKRIAALKADGINRKQAIADLVDPPKVSKRKQNKVQSNQAVSVDTPSNLANIDRYIANLVQQQQDLQTAVAMRSAKFRLEQELAILEAKRQAELDDEEALLALIL*