Scaffold JGI24218J26658_1000098

Overview

Basic Information

• Taxon OID: 3300002092
• Scaffold ID: JGI24218J26658_1000098
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-B6 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 72962
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 89 (88.12%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Associated Families: 11

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.152741
  • Long. (^o): 13.022518

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005167	Metagenome / Metatranscriptome	410	Y
F006979	Metagenome / Metatranscriptome	360	Y
F008023	Metagenome / Metatranscriptome	340	Y
F008806	Metagenome	327	Y
F009327	Metagenome / Metatranscriptome	319	Y
F009741	Metagenome / Metatranscriptome	313	Y
F010448	Metagenome / Metatranscriptome	303	Y
F012098	Metagenome / Metatranscriptome	283	Y
F014843	Metagenome / Metatranscriptome	259	Y
F019092	Metagenome / Metatranscriptome	231	Y
F025484	Metagenome / Metatranscriptome	201	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24218J26658_100009811	F019092	AGGAG	MSNVPLLGQKDVPQQEPMFRLLYCLVCQTLEELPPYDGDPQLDHLLTIACEPHVFPSGEPHKGKLFSLPLRAWAKSESKKEIIRQIKGGGSMGLAEIDDSFYDSRSTFMEGAMECYQRHNKPKDGCADWQDKSKLLIPNTIKERKSEGMARYQDEAGPKTYLCNFCPVSIAVNQRKQKLLEGRP*
JGI24218J26658_100009816	F005167	AGAAGG	MTVNSSRSMNRSLDEGTTDGKYRKVRPDTEVIAGLGDEATVDNRQSLHPFYGYGFLTSEYPTKVNPGK*
JGI24218J26658_100009818	F025484	AGAAGG	MDDGDGMITMELQAKKIAENATQYKGSHPCPGCGVIMNPVEFLNSHKGRCLSCVTQDRSRRAKNRMSH*
JGI24218J26658_100009820	F009741	GGAG	VTNPFDGVYDHSKSWRAPVEPDQVAKKWQYNGPWSTNMERLTTQALMIMNVPGKDIQAMVRPPLPQIQLFPDRFGYGARIEPTIEDIVSVDRNYTEPRVSWYSGGAGGYSGTSRNDLGNL
JGI24218J26658_100009843	F010448	AGAAG	MKGGDISNVSSPQVIVISDVVVKLKEEESRKLLVKKTEYKVGELDVLPLNKLWKISGDYGLSLELAGFEVDGWSEELLEQAFEKFERRVVNPFNYWQLYENRDEVVGLLPYRPNLKAVIDIPDQVARYGSAGVEIGNI*
JGI24218J26658_100009865	F008806	N/A	MTFLVSEDEALRNLLLGMTVTDQKAVANGSPRNVKVYFGQPSQEVVSQSYPYIVIDMIDIAEDTSRAMRGMVKPNYLNDPTYMVQPVQGTQSVQAVQGVSYDSETNDWMMHWPIPVNIDYQVTTYAREPRHDRQILGQILTTKIPMRFAILEPDDGTVRRLDLLDISKRDVTEQGKRLFVNALTVRVSSEITEATYNQVYKALQINVTGPDDAGSQVIGRSTWTPISYNISQP*
JGI24218J26658_100009869	F006979	AGG	MPKTFKADGEKHTVKKNKKGDIIVDHAGNKGKYDKINLTKKAGAKTVKQGVKAVQKYHRTTGK*
JGI24218J26658_100009873	F009327	AGGAG	MRGTKVQGRFKIDYEKLSMEEGVTDELRDPVGTEVDWYVWDEDALQADYANWVDPVYDVSNQESGKGLMWKEPIKVPVIMGQQLRGTNIMNERGFYTVDTLRLVMGVSDVNRLLPKLISDPNFHIQDRIVFQGEVFIPTRVLPRGRYKDNYSVVTVDTNQCNGEELVNFQQFLNYAN*
JGI24218J26658_10000988	F014843	AGGA	VNVLLALDGVLSSESGEPIRAGVILYYALANAHRVSIITSRKTDDAEQWLQGHGIINYDELIDVGAHLEGEDLKKRQFLLARSKAPLEMYVDADPAMCAWVFEKQNVTSLLFSHPGYTKVENRPDAPSKVRKWSDIEAAVTRVNLAKAKEAQRPKEQDFWADKDE*
JGI24218J26658_100009890	F008023	AGGAG	VANKPTSPLDATGLAAEKAAKANQEALRKRKDEISIAAQVEAESLENDVFDPKRPETPLVLDEIEDVGVSVANDTVIIRTITDIDEMTYGVGNSFSFKAGVKYRVPSHLANYLEQLGYIWRPN*
JGI24218J26658_100009899	F012098	AGGA	MPKVHNIGPVFVQITKFPYDWGNKIAVRGWTQEIEEPFRTSKPFILRLPNYKALVCGRWTGTKSEEEALSGALKTREVTYDDFTEEAGWTPAPDSYREESVEDFYTRLGAMDGTLDVHDWEMYIRLAEEPK*