Scaffold JGI24028J26656_1000951

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000951
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7340
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F001915	Metagenome / Metatranscriptome	617	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F012670	Metagenome / Metatranscriptome	278	Y
F040590	Metagenome	161	Y
F099270	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100095110	F004695	N/A	MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVRDPITQYKEVEGTKDQLRVFETMAAEKGLTVKRQNMRKIDVDLAGAAQEAMGPEEQESEPSSKAEEISEALNAHTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDIEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDGDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDAQKHVFEFAPMQGNLAYVQSSMERFEADKMAMIGMTSSGDVLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYIVWKTLIQYSDDYNIQQLANVCGKGKPFMDAISMNNYEFIDRKLINIDLALGFLSDENRLTRQQLIGNAQQAFAQSMMQLDPSVPELFAKVRRPYEDTLRVLGVKDVDAYLPTLEEAAKIIQAKSQQPPSPEHQEITSRTELNKAKTDETVAKTMFTQKKAEDIDTDNMFEMMAAKRGKLSAVEID*
JGI24028J26656_100095111	F003521	GAGG	MKSLVLNIRDFFNRRTRVEDSKKEANVNRRTLVIENGESASRLMRNEDFALLFNLYRFHLLERLEDCRSDPERIDNAHDVAGVRDFISFVEKTEYLGKVALKTNT*
JGI24028J26656_10009512	F001915	GGAG	MEWKLAHPMYDVADIVWMSDTFFGTEADGILKRDKAVFTKNVTIATTVQLFDKHREFIAVCRTPVERLLGFCWFDRGGYTTYAAEEISNAKFHHVDLSLPAKTRVKLIHQMIDQHILWANICGIPVICSTSIRFDNDTFMKLHKQRGFTVNGSYAWIRTEEGMACLMK*
JGI24028J26656_10009513	F012670	GAGG	MFDEIRPEGSVVSSDEKRADARARYAKKKAMKIATGEMIPEIKPSVNPTGRPKSIVNRVTEYGALFNKLNEERLAKGLSPLKTAMEVLIDAMQSDEMDIKDKARIADKLAPFESSRAPIISIEHVQNISKEEEVSADEALDDFLMAIRKV*
JGI24028J26656_10009515	F099270	AGG	MNTNFQYAQAPNRKGNVSKHTPSHSGGATAVTGPKHGTATPKGSQGAPAANGNITGRHQKVMVSTHADYCGTIKNDGYMDKSTKNYLG*
JGI24028J26656_10009516	F040590	GGCGG	MTKGLTKNVNDKLGGFAESHKMSATLANSVRKAFNQNPLSDQHLNDINVAASKKFTTPKLPAKI*
JGI24028J26656_10009517	F001059	AGG	MATYDIEALKADLPTAKELAQFVYDKTQIPLDFIGKPKEDQYQVAKNALEGKKIPSEYMTDLNPYLDKKELIPEDEIKQLPPRSPDLPPEESRVHFFGATNMPHPADPQSDRKVQINFRKYDNGVITFQITGPLEKTAIGERINKFGQKQPEKYSWLDPRTPETLMRRADGTYTEKGRGLYAYCSGEKGGGIWPLIDRELTTFTQKNVTDPWA*