Scaffold JGI24028J26656_1000283

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000283
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18184
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010759	Metagenome	299	Y
F017591	Metagenome	239	Y
F027087	Metagenome / Metatranscriptome	195	Y
F103136	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100028310	F103136	AGGA	MLDIKNVVVSNLNNTKGMMARFVKMKSLLDAKCAANLRLLATKNNINRASDYHYLNLAVTQSTEPVNGLDYIHPVVKPMVDYATAVVSKGLAQNGEINFEFVPDNEADDTAARQATNMVHKIVNQNNDPHFILQHWIMDAMLHKNGEMMVSPMRESFVRYVTTTGTADQLRAFEQQAAEAGLTALRQSRRKQTVDMSQVVKETQSFLNNIPGAQADEDLRARIEAARMGSEGEFEEMADVEPENIEQRDSQDEIDASIARNTIYEARYKLTGYTLNIKFRPIAQHYWMCDPTVIEIQEQPFCGFYKPCSIQEATELYPDINLDEFQVHAQYSNVGAYQAGSLLNNLALHARDSVPINGLPAQGYAAQDANSRQVTILTVWNRYDIDGDGELELIELIYSGNYVISAREVEFIPVANMVPKPLAQNFYGMSIAESVVPMQEYMTSGHRAEIQLGLLQSTSRIGVKPDKLDFEMIQDGEAAIFILDSKFDPAKDIYALPVPNGNISFIDQAMNRMQNDTMAMIGMTTPQDVFNPEVMDPGNSGAKLNLALSPNQIIQDNTVKNCAEGLKDALWLVWRTLIAHSDDYGVKKLAAEFSPDKKPVFLDAMSFDDMNFNDRKTIHIDLALGMKSEENSLQRLQIIKQAQTGLSQEVAAGVASNTLTPAAFKKLKKPYADMLYVLGIKDCDTYLPTDEEVMEMVQQAKAAQAQQQPSPKDQADVLATQAKANLDKIRAEQIQAEVAGNTADKQLEGYSLIKEHKARAYGP*
JGI24028J26656_100028312	F027087	N/A	MDDAAARQLADIRILQKVNAASREAFGVKYPGQVEHCLRLVMERLQAGLDKRDGVDVARTDTWRMSTVEILDLARSAQLLNDIRRGF*
JGI24028J26656_10002835	F017591	AGGA	MSTQIADANALVSYVEDFTGSSNNDEIKQCIYLAELMMRNIELPALRTNPYTTIGTANSDGYVPIPANMNKPILFFNNSSPSGPWIVYDRIGDRDIITQQLIENLYLNPINIPSVYRGKFGEVGQFYEFLPGLQPSSQVCMYYYTTWPLLFSLETDGTTVVLNNVVLQSFPEGYIYGTLHNYYLKRKMPEDAAYWRAKFDDAWNTIEDQNNKGKWSGGHNRLTSIFQPRRDQRYSVR*
JGI24028J26656_10002836	F010759	N/A	MSEFDHYQDSSELDGPDPEHNPDQYRQDRGGLVTAHNGIADRLLRNDALYNTLKGDWKRTDFNKSRNIRTTTGREDGKFYIQKEQFNTDYIVELCRAYRERAEAGYIDPLAPLMPDGTIGYKWMELPDVIAQDIGNKYFGGLGWQTIKRDKTMKAQFYRVVQQEYNDFICYPGGRLPIPIEVPYPAAVGQDKFFAGANFAGKQ*