Scaffold JGI24028J26656_1000225

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000225
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 22233
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002539	Metagenome	550	Y
F012318	Metagenome / Metatranscriptome	281	Y
F017967	Metagenome	237	Y
F028086	Metagenome	192	Y
F086581	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100022523	F086581	AGG	MSFDFDPVKYGVLWQKVEGYEQKFNEISRKQDKMESQLEELVALANKSRGGFWMGMAIVSGISGLISFFAGLWHGK*
JGI24028J26656_100022528	F028086	GGA	MTNEPVPFGGNVKVPSDDCEEAFFAFYPDFFYEGSTALNLWTQAWQAALDHVENKKPVIQLL*
JGI24028J26656_100022532	F002539	AGGAG	MDSNYIWTASGTDITIRWKQLGWIPPSELQGYRDKWRYYQNLPLRQLDDAAKEQYEQVLRKAKVMRIK*
JGI24028J26656_100022533	F017967	GGA	MGIKYYLKAPVSEYADKAGEPKKRYQTIGIVTETKKGDLMFKLELIPLLGLKEGAIWGYLNVPEDKPDQPKHLSDIESDIPF*
JGI24028J26656_10002254	F012318	AGGAG	MAYNSAFSPFGPTYLVSTSPVQVKSSNNVYPSGYRIMNITSSIVRVGWQPQEPGDATVTPVATTPTATGVANVLSIPANGVGVFSGIPPNAWFIASAATSLEITPGEGIN*