Scaffold JGI24028J26656_1000211

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000211
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23214
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (72.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000843	Metagenome / Metatranscriptome	864	Y
F002405	Metagenome	562	Y
F004448	Metagenome / Metatranscriptome	437	Y
F012448	Metagenome / Metatranscriptome	280	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100021117	F004448	AGGAGG	MTGREIMINFIRDILRPKTLEEIIQKELREAYISKMDAEKALEYATSVVEYNHQRIRRLEERLKEIK*
JGI24028J26656_10002114	F012448	AGGA	VIDSTNPQRTSMTLPETKGDPRYTKIEPQYIEFAEVDDIWVRAYNVAKAKSVISQHVHAHDHITLVSRGTIEAYQDGEFMGRFVAPALITILAGKKHAFLAITDDVTLCCLHNLRGTGLQSPEIKES*
JGI24028J26656_10002116	F000843	N/A	MPLHFVPPVQLPAVWPIAAPMLQKAIDLDPSAITIEQAEFLIRTGRTFLLVWEEPNEGITGAVTVEFIDYPRERMAHVDLMGGKGIVRDHVFEEAKQWMRSMGATTAQCWCKDNLVPMYEKMGMENTHKVMRIKL*
JGI24028J26656_10002119	F002405	GAG	MTPSQLKEPEWVFPFHLMGVGDSFFIPTIRLAEMIYAIDSGAKRAGVRVKAYVTVKDNHIGVRAWRVR*