Scaffold JGI24028J26656

Basic Information
Taxon OID	3300002091 Open in IMG/M
Scaffold ID	JGI24028J26656_1000122 Open in IMG/M
Source Dataset Name	Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300002091 Open in IMG/M

Scaffold ID

JGI24028J26656_1000122 Open in IMG/M

Source Dataset Name

Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	33636
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (94.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

33636

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

47 (94.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location
Location Name	Brandenburg, Germany
Coordinates	Lat. (^o)	53.1666	Long. (^o)	13.0333	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Brandenburg, Germany

Coordinates

Lat. (^o)

53.1666

Long. (^o)

13.0333

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013732	Metagenome / Metatranscriptome	268	Y
F027395	Metagenome	194	N
F040987	Metagenome	160	N
F042707	Metagenome	157	N
F068205	Metagenome	125	N
F091222	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_10001222	F027395	AGTAG	MSYTIVEGSTIRFYTSQPFSSIAGTVVNPDNVVFSYSVQGQTEITYHWTNPTGDPTGHIFQASGGTGYFQCDVSTVGLPGTWSWQWGCYPSSGVDTTHTQVYTGGNVIVSASDL*
JGI24028J26656_100012222	F040987	GGA	MQSTTLQRGAEERKVTLYKNGESFLITCEVLASLFHEVGHTETLYSPETEPQAEFLYGSAVRFLQGFQYIVTDGELA*
JGI24028J26656_100012226	F042707	AGGGGG	MTKWYNQPARELLPAMCQKGITDEIEIIENLVDEMNLAGNQAAVCEATYKALYAQTRLSVRYLSKTKLTVDEVESQATVQCEEAHLNYLVAQNKLVTTREALRAAQSRLDAWRSLASGFRSAGG*
JGI24028J26656_100012232	F068205	GGA	MGADSLSSNEDGLASLTSTPKVGRFGNLLLGYSGSFKVGAMYFKVASKAHNPTLEQLLESVKMPDDLKDDWELLAIEGGRLYEISSNSGAIEARRDSDGYCYGAIGSGAAPALGSLYTDHEDEGSLYQALEASAMHTTNVRSPFLVISL*
JGI24028J26656_100012244	F013732	AGG	MPAINLPNNQSAILYGRDEISERTARSISRSYMKAAGAAATLVKLGFDESNPDSWSVFSNLEDSDRDSLDGYQAALIVGMVQSWSLGDLPTLESALDLPKNVFDALATACADEFNGVINTEPSLDPKAPTAD*
JGI24028J26656_10001228	F091222	AGGAGG	VKLIDTLTELDFVRESEGEFSNTYRANGFDMRSNVFVNESINERHVQVCLMPYDPDEEPIWVTFSKYCLAVDNLLKQWTGKHD*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold JGI24028J26656_1000122

Overview

Ecosystem & Geography

Associated Families

Sequences