Scaffold JGI24028J26656_1000068

Overview

Basic Information

• Taxon OID: 3300002091
• Scaffold ID: JGI24028J26656_1000068
• Source Dataset Name: Lentic bog actinobacteria communities from Grosse Fuchskuhle, Germany - Sample acI-B2 co-culture F-F8 metagenome
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51710
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (25.93%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Lentic → Lentic Enriched Actinobacterial Communities From Dystrophic Bog Grosse Fuchskuhle, Brandenburg, Germany

Source Dataset Sampling Location

• Location Name: Brandenburg, Germany
• Coordinates
  • Lat. (^o): 53.1666
  • Long. (^o): 13.0333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24028J26656_100006823	F055388	N/A	VILKCSGAGTPILRGCQSLTNQNRVLERRLFSWHTILKNKQINYMAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSNRCIQNADDVQFETIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSQWIGGAGHRWVPVSNGQSLVSCVAEDDQMFVVQEFQGTAEGSFNMGYVYVKMAASNLGNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLAVDYAYNNTLSTFDATNVATWPRLVRVLPYIPVTTELGCKYVQNPAYNNADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWQWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNTSRLIIPAPCTLSPQGAPDATPDCFVCSSVVSQPI*
JGI24028J26656_100006828	F030662	GGAG	MRLKDRNGPIPSGLWYEYSDDKGNVYRVNGMETVYGRSFSNKVSSDMKNNNVAVPDNLDYLIEQQICERIPGQFCWKEAGDKVANVIHKFANLGDRVASSLGINPNLEQRAKGCTACKKRREALNQALG*
JGI24028J26656_100006829	F048735	N/A	MDYKGLCLDEPQDTDYGIEAFQSLPQFIRELTAYRITRGEFGRRERIKLGIKLENTTLKNPAQHMVNCFKLIYGDEVLLQSQGIANNYALDIIELFCNENDWGIAGCASSGKTFSVAACIVVDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQSKYGSVAAIGNLVEYRRMIVFESIDTRDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPEDVLEWDAVNRYTKQWKTRTGVALHLSGEDSPNFQKPDADVPPFDRFLTIQGEAATLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFITNCDIAWEPRWSARTKVVCGFDPAFTAGGDRCAATFCRFGANDTGRNLGFYLGTREYTSSVGEVFEESIAIQVVRDCLEFGVHPRDFGLDISGDGGKMMRAIIIEWSKNHPEAMYVFPISSMGPPTDRKISNLDTRTCKEAYDRLVTEYWFAVHTAFSTRSLVGISLNDHAMMVSELCSRLYTHKGRKVAVEKKSDMKQRIKKSPDLADSMTYAVQMLRRAGLEFNFEKEVESLDIQEIQDWENRLIKNRGDKESPDGDDDMSYAGTSVDEDGF*
JGI24028J26656_10000686	F038058	GGA	MAGEQYTHDYTERGIVSESPTPQPMQRMALKNDIAAIRAYKDASTARIKAIGEKTQKAFSVGGPANETAMGRGTPFNCDWL*