Scaffold JGI24811J26625_10097

Overview

Basic Information

• Taxon OID: 3300002088
• Scaffold ID: JGI24811J26625_10097
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 200um emPCR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3493
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068970	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
JGI24811J26625_100975	F068970	N/A	LIEIELGTVVTLTLIMTSSLSFCLMIINFNIPAFGKYFGDIKVYSDVYTGGGNSSKPINQFDPVNKEIYVGQTIKWSNPTAGAPYPHIVVFVSNQSAELESKISNFTKPLHSSNGQSVVGNLNKLLIEDNNHNNKSNQTFSARSIVLPSVINTSSLTVKYLNANGSGIYSGAGYNFTGNERYVSSGLIWAGGVIPGNFAKINSFIVTFTKPGTYHYQCLIYPEMKGTIIVKPSLGLFELFGNQVK*