Scaffold JGI24811J26625_10088

Overview

Basic Information

• Taxon OID: 3300002088
• Scaffold ID: JGI24811J26625_10088
• Source Dataset Name: Soil microbial communities from Manhattan, Kansas, USA - Sample 200um emPCR
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3694
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Kansas (Konza Prairie Natural Area And Manhattan, Kansas, Usa)

Source Dataset Sampling Location

• Location Name: Manhattan, Kansas, USA
• Coordinates
  • Lat. (^o): 39.214
  • Long. (^o): -96.5852
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000850	Metagenome / Metatranscriptome	861	Y
F084379	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI24811J26625_100885	F000850	GGA	MKKPELTDVAWLGPKEEMDRASHRVGKCSECLEIICVEKAVTETENTQPETTEKLYAAFNAHVKLKHAEDFSQAA*
JGI24811J26625_100887	F084379	GAGG	MLHVPTPELVHAMKDCLRDLENTKLISPSDLDIIDEKRILRQKIAELENEVSVGQEKAG*