Scaffold SMTZ23_10058568

Overview

Basic Information

• Taxon OID: 3300002053
• Scaffold ID: SMTZ23_10058568
• Source Dataset Name: Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5085
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment → Marine Sediment Microbial Communities From White Oak River Estuary, North Carolina

Source Dataset Sampling Location

• Location Name: White Oak River estuary, North Carolina, USA
• Coordinates
  • Lat. (^o): 34.6478111
  • Long. (^o): -77.1112083
  • Depth (m): .24 to .32

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009204	Metagenome	321	Y
F029747	Metagenome / Metatranscriptome	187	Y
F038235	Metagenome	166	N

Sequences

Protein ID	Family	RBS	Sequence
SMTZ23_1005856811	F009204	N/A	MKTTIKYYVQNIYGVRREKFINKAQEDVFIRLTGRKTLDSVSRELIRDLSGSSVEFEQVLPPQ*
SMTZ23_100585685	F029747	AGG	MKYELILQTATCDSYSTFAHTREGLTAAFERLDRERLKEGFQSAKIVSDRDGDVFVLDHNFVSA*
SMTZ23_100585686	F038235	N/A	MIREILAPFERLTYVREDGNKAVYKVFRPTKHLFVNKKKDNGRVVGFRAWKMPDCGADERMGWRSFRFDRIANRKLTFV*